Wikipedia:WikiProject Molecular Biology/Genetics/Gene Wiki
Gene Wiki – Project
Welcome edit
±
Welcome to the Gene Wiki project - dedicated to applying community intelligence to the annotation of gene and protein function. The Gene Wiki is an informal collection of pages on human genes and proteins, and this effort to develop these pages is tightly coordinated with the Genetics taskforce of Molecular Biology. Its specific aims are:
To ensure each notable human gene has at least a stub Wikipedia page
To make those articles as well written and informative as possible
To invite participation by interested lay editors, students, professionals, and academics from around the world
To make sure that Gene Wiki articles are linked from existing Wikipedia content, increasing the value of both
The Gene Wiki, in aggregate, comprises over 10,000 distinct gene pages, spanning 2.07 million words and 82 megabytes of data. These pages are viewed over 50 million times per year and edited over 15,000 times per year.
Please browse around the Gene Wiki, make an edit to your favorite gene page, and feel free to ask questions!
Huss JW, Orozco C, Goodale J, Wu C, Batalov S, Vickers TJ, Valafar F, Su AI (Jul 2008). "A gene wiki for community annotation of gene function". PLOS Biology. 6 (7): e175. doi:10.1371/journal.pbio.0060175. PMC2443188. PMID 18613750.
Huss JW, Lindenbaum P, Martone M, Roberts D, Pizarro A, Valafar F, Hogenesch JB, Su AI (Jan 2010). "The Gene Wiki: community intelligence applied to human gene annotation". Nucleic Acids Research. 38 (Database issue): D633-9. doi:10.1093/nar/gkp760. PMC2808918. PMID 19755503.
Good BM, Clarke EL, de Alfaro L, Su AI (Jan 2012). "The Gene Wiki in 2011: community intelligence applied to human gene annotation". Nucleic Acids Research. 40 (Database issue): D1255-61. doi:10.1093/nar/gkr925. PMC3245148. PMID 22075991.
Good BM, Howe DG, Lin SM, Kibbe WA, Su AI (Dec 13, 2011). "Mining the Gene Wiki for functional genomic knowledge". BMC Genomics. 12 (1): 603. doi:10.1186/1471-2164-12-603. PMC3271090. PMID 22165947.
Good BM, Clarke EL, Loguercio S, Su AI (Apr 24, 2012). "Linking genes to diseases with a SNPedia-Gene Wiki mashup". Journal of Biomedical Semantics. 3 (Suppl 1): S6. doi:10.1186/2041-1480-3-S1-S6. PMC3337266. PMID 22541597.
Good BM, Clarke EL, Loguercio S, Su AI (2012). "Building a biomedical semantic network in Wikipedia with Semantic Wiki Links". Database. 2012: bar060. doi:10.1093/database/bar060. PMC3308151. PMID 22434829.
Su, Andrew I.; Good, Benjamin M.; van Wijnen, Andre J. (2013). "Gene Wiki Reviews: Marrying crowdsourcing with traditional peer review". Gene. 531 (2): 125. doi:10.1016/j.gene.2013.08.093. ISSN 0378-1119. PMID 24012870.
Burgstaller-Muehlbacher S, Waagmeester A, Mitraka E, Turner J, Putman T, Leong J, Naik C, Pavlidis P, Schriml L, Good BM, Su AI (2016). "Wikidata as a semantic framework for the Gene Wiki initiative". Database : The Journal of Biological Databases and Curation. 2016: baw015. doi:10.1093/database/baw015. PMC4795929. PMID 26989148.
Tsueng, Ginger; Good, Benjamin M.; Ping, Peipei; Golemis, Erica; Hanukoglu, Israel; van Wijnen, Andre J.; Su, Andrew I. (2016). "Gene Wiki Reviews—Raising the quality and accessibility of information about the human genome". Gene. 592 (2): 235–238. doi:10.1016/j.gene.2016.04.053. PMC5944608. PMID 27150585.
Jul 18, 2008 -- First NIH grant funding approved (BioGPS grant)
Dec 9, 2009 -- Dedicated NIH grant for Gene Wiki
Feb 19, 2013 -- Wikidata:WikiProject Molecular biology started
Jul 15, 2014 -- NIH grant for Gene Wiki renewed
FAQ edit
Remember, go ahead and be bold with your edits. You can't do any irrevocable harm, and any mistakes can be fixed by other editors. You can always ask questions on the talk page.
How do I start editing the gene articles on wikipedia?
• How to make your first edit (in two minutes or less) (video)
• Find your favorite gene page. You can do that by searching directly here at Wikipedia (search box in the left-hand bar), and in most cases you can also find it by searching at Google or by using our Entrez Gene ID lookup tool.
• Read the article, and identify an improvement you can make. This can be as simple as correcting a typo or as complex as summarizing a recent paper. Note some distinctive text around the place you're going to make your edit (to be used below).
• Click the "Edit" tab at the top of the page
• You are now viewing the "source code" of the gene page, which can often be a bit intimidating. To help see past the confusing parts, use your browser's "search" function to find the distinctive text you noted above.
• Make your edit. You can pretty much type text and it should appear roughly how you intend it. For more powerful editing options, see the help pages.
• Click the "Show preview" button at the bottom. Confirm that your edits look correct.
• Add a brief Edit summary, and then click the big, blue "Publish changes" button. You're done!
• How to add a reference to the "Further Reading" section
• Find the Pubmed ID of the article you want to add. Obviously, use Pubmed.
• Enter the Pubmed ID into the Wikipedia formatting tool. Copy the wikicode in the text box to your clipboard.
• Find your favorite gene page. You can do that by searching directly here at Wikipedia (search box in the left-hand bar), and in most cases you can also find it by searching at Google or by using our Entrez Gene ID lookup tool.
• Click the "Edit" link to the right of the "Further Reading" section header.
• Add a new line after the "{{refbegin | 2}}" and before the "{{PBB_Further_reading" lines (use your browser's search function if necessary).
• Paste the Pubmed wikicode from your clipboard.
• Click the "Show preview" button at the bottom. Confirm that your edits look correct.
• Add a brief Edit summary, and then click "Publish changes". You're done!
• How to add an inline reference
• Find the Pubmed ID of the article you want to add. Obviously, use Pubmed.
• Enter the Pubmed ID into the Wikipedia formatting tool. Copy the wikicode in the text box to your clipboard.
• Find your favorite gene page. You can do that by searching directly here at Wikipedia (search box in the left-hand bar), and in most cases you can also find it by searching at Google or by using our Entrez Gene ID lookup tool.
• Click the "Edit" link at the top of the page or next to the section header.
• At the location you want to add the inline reference, paste the wikicode from the clipboard. Then, add "<ref>" before the pasted text, and "</ref>" after the pasted text.
• Click the "Show preview" button at the bottom. Confirm that your edits look correct.
• Add a brief Edit summary, and then click "Publish changes". You're done!
• How to add a redirect from a synonym/alias to a gene page
• Enter the gene alias in the Wikipedia search box and hit "Go" or return.
• If Wikipedia reports that "No page with that title exists.", click the "Create the page" link in the middle of the page.
• Add the text #redirect [[Gene name]] to the page to which you want this synonym to redirect.
• Click the "Show preview" button at the bottom. Confirm that the target link looks correct.
• Add a brief Edit summary, and then click "Publish". You're done!
• How to create a new Gene Wiki article
• Go to the GeneWikiGenerator and enter the Entrez id for your gene, then click "Search by Symbol or Accession"
• The top frame contains the Code Creator. It does a series of checks to make sure your gene doesn't already exist. If the Template and Article titles are marked as "missing", we can proceed.
• To create a new Protein Box template, simply click "create" under the Template section. An indicator will let you know that the template is being created and uploaded to Wikipedia.
• To create a new Gene Wiki article, click on the title you want to use from the suggestions, or enter your own. Click "Check" to make sure your title doesn't conflict with a page that already exists. If it doesn't, click "Create '<article name>'". Once it says "Created (reload page)", you may visit your brand-new page on Wikipedia.
• (Please note that the Code Creator is still in beta. If you find any bugs or annoyances, please let the developer know about it on his talk page.)
Will my manual changes be overwritten by automated edits?
Generally speaking, no, your manual changes will not be overwritten. Most edits that you will want to do will be in the "free text" section of the page, and those sections are ignored by our bot. The information in {{GNF_Protein_box}} may be overwritten when new information is propagated by ProteinBoxBot, but fields in that template that are often edited by humans (such as the image and image_caption fields) are not changed unless they're blank. If you want to prevent the bot from overwriting anything, just include the {{nobots}} flag. For more specific questions, please post on the talk page.
add graphics of protein structures where missing or replace existing graphics with improved versions
create some step-by-step instructions for new editors? Perhaps using http://www.screensteps.com?
for programmers interested in contributing, check out some of our project proposals page
Acknowledgements edit
The Gene Wiki is sustained through the efforts of many enthusiastic Wikipedia users and editors, many of whom are also affiliated with the Molecular and Cellular Biology Wikiproject. In addition, the Gene Wiki effort is partially supported by a grant from the National Institutes of Health (1R01GM083924-01).
RSS